do you know MKV to iPad Converter
I used Aneesoft iPad Video Converter convert my video to ipad,it's usually works fine for me .
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iDealshare VideoGo is highly recommended MKV to iPad Converter due to its high efficiency and easy operation, as well as free of ads and virus.
Besides converting MKV to iPad, it also helps to convert almost all kinds of video formats to iPad like convert AVI, WMV, ASF, MPG, ARF, FLV, F4V, F4F, VOB, MXF, AVCHD, DV, XAVC, MTS, TS, 3GP, DAV, RMVB, 3GP, MVI, BIK, etc. to iPad.
Have you tried Faasoft Video Converter? This tool has the feature of converting MKV to iPad supported formats.
Here is a step by step guide on how to convert MKV to iPad with this tool "MKV to iPad - How to Play 720/1080p MKV on iPad Air / iPad mini / iPad 4 / iPad 3 / iPad 2 / iPad?".
Hope it will help you more or less.